3B8K Transferase date Nov 01, 2007
title Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2)
authors X.Yu, Y.Hiromasa, H.Tsen, J.K.Stoops, T.E.Roche, Z.H.Zhou
compound source
Molecule: Dihydrolipoyllysine-Residue Acetyltransferase
Chain: A
Fragment: C-Terminal Catalytic Domain
Synonym: Pyruvate Dehydrogenase Complex E2 Subunit; Pdce2 E2; Dihydrolipoamide S- Acetyltransferase Component Of Pyruvate Dehydrogenase Complex; Pdc-E2; 70 Kda Mitochondrial Autoantigen Of Primary Biliary Cirrhosis; Pbc; M2 Antigen Complex 70 Kda Subunit;
Ec: 2.3.1.12
Engineered: Yes
Other_details: Component Of Pyruvate Dehydrogenase Complex, Mitochondrial
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dlat, Dlta
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.80 Å
ligand
enzyme Transferase E.C.2.3.1.12 BRENDA
Primary referenceStructures of the human pyruvate dehydrogenase complex cores: a highly conserved catalytic center with flexible N-terminal domains., Yu X, Hiromasa Y, Tsen H, Stoops JK, Roche TE, Zhou ZH, Structure. 2008 Jan;16(1):104-14. PMID:18184588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3b8k.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 3B8K
  • Likely Quarternary Molecular Structure file(s) for 3B8K
  • Retrieve 3B8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B8K from S2C, [Save to disk]
  • View 3B8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B8K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B8K, from MSDmotif at EBI
  • Fold representative 3b8k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b8k] [3b8k_A]
  • SWISS-PROT database: [P10515]
  • Domain organization of [ODP2_HUMAN] by SWISSPFAM
  • Other resources with information on 3B8K
  • Community annotation for 3B8K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science