3B92 Hydrolase date Nov 02, 2007
title Novel Thio-Based Tace Inhibitors Part 2: Rational Design, Synthesis And Sar Of Thiol-Contaning Aryl Sufones
authors Y.Wei
compound source
Molecule: Adam 17
Chain: A
Fragment: Tace Proteinase Domain, Unp Residues 216-474
Synonym: A Disintegrin And Metalloproteinase Domain 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Convertase, Snake Venom-Like Protease, Cd156b Antigen;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Virus
Expression_system_plasmid: Pbev11topo
symmetry Space Group: P 42 21 2
R_factor 0.238 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.720 76.720 105.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 440, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel thiol-based TACE inhibitors. Part 2: Rational design, synthesis, and SAR of thiol-containing aryl sulfones., Bandarage UK, Wang T, Come JH, Perola E, Wei Y, Rao BG, Bioorg Med Chem Lett. 2007 Nov 13;. PMID:18054488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3b92.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3B92
  • CSU: Contacts of Structural Units for 3B92
  • Likely Quarternary Molecular Structure file(s) for 3B92
  • Structure Factors (179 Kb)
  • Retrieve 3B92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B92 from S2C, [Save to disk]
  • Re-refined 3b92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B92
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B92, from MSDmotif at EBI
  • Fold representative 3b92 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b92_A] [3b92]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 3B92
  • Community annotation for 3B92 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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