3B93 Cytokine date Nov 02, 2007
title Crystal Structure Of Human Gitrl
authors X.M.Song, Z.C.Zhou
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 1
Chain: A, B, C
Fragment: Tnf Domain
Synonym: Glucocorticoid-Induced Tnf-Related Ligand, Hgitrl, Activation-Inducible Tnf-Related Ligand, Aitrl;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfsf18, Aitrl, Gitrl, Tl6
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.280
length a length b length c angle alpha angle beta angle gamma
104.413 46.384 76.460 90.00 91.56 90.00
method X-Ray Diffractionresolution 2.20 Å
note 3B93 is a representative structure
A, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3b93.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 3B93
  • Likely Quarternary Molecular Structure file(s) for 3B93
  • Structure Factors (282 Kb)
  • Retrieve 3B93 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B93 from S2C, [Save to disk]
  • Re-refined 3b93 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B93 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B93
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B93, from MSDmotif at EBI
  • Fold representative 3b93 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b93_B] [3b93] [3b93_C] [3b93_A]
  • SWISS-PROT database: [Q9UNG2]
  • Domain organization of [TNF18_HUMAN] by SWISSPFAM
  • Other resources with information on 3B93
  • Community annotation for 3B93 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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