3B96 Oxidoreductase date Nov 02, 2007
title Structural Basis For Substrate Fatty-Acyl Chain Specificity: Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase
authors R.P.Mcandrew, Y.Wang, A.W.Mohsen, M.He, J.Vockley, J.J.Kim
compound source
Molecule: Very Long-Chain Specific Acyl-Coa Dehydrogenase
Chain: A
Synonym: Vlcad
Ec: 1.3.99.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acadvl, Vlcad
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a
symmetry Space Group: C 2 2 21
R_factor 0.159 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.616 107.879 149.776 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand FAD, MYA enzyme Oxidoreductase E.C.1.3.99 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for substrate fatty acyl chain specificity: crystal structure of human very-long-chain acyl-CoA dehydrogenase., McAndrew RP, Wang Y, Mohsen AW, He M, Vockley J, Kim JJ, J Biol Chem. 2008 Apr 4;283(14):9435-43. Epub 2008 Jan 28. PMID:18227065
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3b96.pdb1.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 3B96
  • CSU: Contacts of Structural Units for 3B96
  • Likely Quarternary Molecular Structure file(s) for 3B96
  • Structure Factors (1490 Kb)
  • Retrieve 3B96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B96 from S2C, [Save to disk]
  • Re-refined 3b96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B96
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B96, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b96_A] [3b96]
  • SWISS-PROT database: [P49748]
  • Domain organization of [ACADV_HUMAN] by SWISSPFAM
  • Other resources with information on 3B96
  • Community annotation for 3B96 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science