3B9M Lipid Binding Protein date Nov 05, 2007
title Human Serum Albumin Complexed With Myristate, 3'-Azido-3'- Deoxythymidine (Azt) And Salicylic Acid
authors L.Zhu, F.Yang, L.Chen, E.J.Meehan, M.Huang
compound source
Molecule: Serum Albumin
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
symmetry Space Group: C 1 2 1
R_factor 0.242 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.536 38.458 95.368 90.00 104.92 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand AZZ, MYR, SAL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA new drug binding subsite on human serum albumin and drug-drug interaction studied by X-ray crystallography., Zhu L, Yang F, Chen L, Meehan EJ, Huang M, J Struct Biol. 2008 Apr;162(1):40-9. Epub 2007 Dec 28. PMID:18258455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (3b9m.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3B9M
  • CSU: Contacts of Structural Units for 3B9M
  • Likely Quarternary Molecular Structure file(s) for 3B9M
  • Structure Factors (117 Kb)
  • Retrieve 3B9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B9M from S2C, [Save to disk]
  • Re-refined 3b9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B9M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B9M, from MSDmotif at EBI
  • Fold representative 3b9m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b9m] [3b9m_A]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 3B9M: [ALBUMIN ] by SMART
  • Other resources with information on 3B9M
  • Community annotation for 3B9M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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