3BD5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BTB, CO enzyme
Primary referenceCrystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals., Park SY, Lee WR, Lee SC, Kwon MH, Kim YS, Kim JS, Proteins. 2008 Mar 12;. PMID:18338383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3bd5.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3bd5.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (3bd5.pdb3.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3BD5
  • CSU: Contacts of Structural Units for 3BD5
  • Likely Quarternary Molecular Structure file(s) for 3BD5
  • Structure Factors (207 Kb)
  • Retrieve 3BD5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BD5 from S2C, [Save to disk]
  • Re-refined 3bd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BD5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bd5] [3bd5_A] [3bd5_B]
  • SWISS-PROT database:
  • Domain found in 3BD5: [IGv ] by SMART

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