3BDY		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component V
Primary reference	Variants of the antibody herceptin that interact with HER2 and VEGF at the antigen binding site., Bostrom J, Yu SF, Kan D, Appleton BA, Lee CV, Billeci K, Man W, Peale F, Ross S, Wiesmann C, Fuh G, Science. 2009 Mar 20;323(5921):1610-4. PMID:19299620

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3bdy.pdb1.gz) 68 Kb Biological Unit Coordinates (3bdy.pdb2.gz) 33 Kb LPC: Ligand-Protein Contacts for 3BDY CSU: Contacts of Structural Units for 3BDY Likely Quarternary Molecular Structure file(s) for 3BDY Structure Factors (189 Kb) Retrieve 3BDY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BDY from S2C, [Save to disk] Re-refined 3bdy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BDY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bdy] [3bdy_H] [3bdy_L] [3bdy_V] SWISS-PROT database: [P01857] [P01834] [P15692] Domains found in 3BDY: [IG_like] [IGv] [PDGF ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---