3BEA	Transferase	date	Nov 16, 2007
title	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor
authors	C.Schubert
compound		source
Molecule: Macrophage Colony-Stimulating Factor 1 Receptor Chain: A Synonym: Csf-1-R, Fms Proto-Oncogene, C-Fms, Cd115 Antigen Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Csf1r, Fms Expression_system: Spodoptera Frugiperda
symmetry	Space Group: H 3	R_factor 0.193 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.140 81.140 145.650 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.02 Å
ligand	IXH, SO4	enzyme	Transferase E.C.2.7.10.1 BRENDA
subcellular loc.	Membrane localization by OPM: Eukaryotic plasma membrane extracellular side cytoplasmic side
Primary reference	Design and synthesis of a pyrido[2,3-d]pyrimidin-5-one class of anti-inflammatory FMS inhibitors., Huang H, Hutta DA, Hu H, DesJarlais RL, Schubert C, Petrounia IP, Chaikin MA, Manthey CL, Player MR, Bioorg Med Chem Lett. 2008 Apr 1;18(7):2355-61. Epub 2008 Mar 4. PMID:18342505

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (3bea.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 3BEA CSU: Contacts of Structural Units for 3BEA Likely Quarternary Molecular Structure file(s) for 3BEA Structure Factors (189 Kb) Retrieve 3BEA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BEA from S2C, [Save to disk] Re-refined 3bea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BEA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3BEA

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3BEA, from MSDmotif at EBI Fold representative 3bea from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bea_A] SWISS-PROT database: [P07333] [Q02763] Domain organization of [CSF1R_HUMAN] [TIE2_HUMAN] by SWISSPFAM Domain found in 3BEA: [TyrKc ] by SMART Alignments of the sequence of 3BEA with the sequences similar proteins can be viewed for 3BEA's classification [CSF1R_HUMAN] [TIE2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CSF1R_HUMAN] [TIE2_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 3BEA

Community annotation for 3BEA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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