3BEA Transferase date Nov 16, 2007
title Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor
authors C.Schubert
compound source
Molecule: Macrophage Colony-Stimulating Factor 1 Receptor
Chain: A
Synonym: Csf-1-R, Fms Proto-Oncogene, C-Fms, Cd115 Antigen
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Csf1r, Fms
Expression_system: Spodoptera Frugiperda
symmetry Space Group: H 3
R_factor 0.193 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.140 81.140 145.650 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.02 Å
ligand IXH, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceDesign and synthesis of a pyrido[2,3-d]pyrimidin-5-one class of anti-inflammatory FMS inhibitors., Huang H, Hutta DA, Hu H, DesJarlais RL, Schubert C, Petrounia IP, Chaikin MA, Manthey CL, Player MR, Bioorg Med Chem Lett. 2008 Apr 1;18(7):2355-61. Epub 2008 Mar 4. PMID:18342505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3bea.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3BEA
  • CSU: Contacts of Structural Units for 3BEA
  • Likely Quarternary Molecular Structure file(s) for 3BEA
  • Structure Factors (180 Kb)
  • Retrieve 3BEA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BEA from S2C, [Save to disk]
  • Re-refined 3bea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BEA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BEA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BEA, from MSDmotif at EBI
  • Fold representative 3bea from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bea] [3bea_A]
  • SWISS-PROT database: [P07333] [Q02763]
  • Domain organization of [CSF1R_HUMAN] [TIE2_HUMAN] by SWISSPFAM
  • Domain found in 3BEA: [TyrKc ] by SMART
  • Other resources with information on 3BEA
  • Community annotation for 3BEA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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