3BED Transferase date Nov 16, 2007
title Mannosesorbose Specific Iia Subunit Of Phosphotransferase S Enterococcus Faecalis
authors J.Osipiuk, R.Wu, S.Moy, A.Joachimiak, Midwest Center For Structu Genomics (Mcsg)
compound source
Molecule: Pts System, Iia Component
Chain: A, B
Engineered: Yes
 Organism_scientific: Enterococcus Faecalis
Organism_taxid: 226185
Strain: V583
Atcc: 700802
Gene: Ef_0461
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.157 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.059 37.503 76.993 90.00 121.49 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand MLY, MSE enzyme
note 3BED supersedes 2IAC
Gene EF
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3bed.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (3bed.pdb2.gz) 189 Kb
  • LPC: Ligand-Protein Contacts for 3BED
  • CSU: Contacts of Structural Units for 3BED
  • Likely Quarternary Molecular Structure file(s) for 3BED
  • Structure Factors (762 Kb)
  • Retrieve 3BED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BED from S2C, [Save to disk]
  • Re-refined 3bed structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BED
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BED, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bed] [3bed_A] [3bed_B]
  • SWISS-PROT database: [Q838I6]
  • Domain organization of [Q838I6_ENTFA] by SWISSPFAM
    • Other resources with information on 3BED
  • Community annotation for 3BED at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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