3BEJ	Transcription Regulator	date	Nov 19, 2007
title	Structure Of Human Fxr In Complex With Mfa-1 And Co-Activato
authors	S.M.Soisson, G.Parthasarathy, J.W.Becker
compound		source
Molecule: Bile Acid Receptor Chain: A, B Fragment: Residues 249-486 Synonym: Farnesoid X-Activated Receptor, Farnesol Receptor Nuclear Receptor Subfamily 1 Group H Member 4, Retinoid X R Interacting Protein 14, Rxr-Interacting Protein 14; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h4, Bar, Fxr, Hrr1, Rip14 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Pgex-Kg
Molecule: Nuclear Receptor Coactivator 1 Chain: E, F Fragment: Residues 676-700 Synonym: Ncoa-1, Steroid Receptor Coactivator 1, Src-1, Rip Protein Hin-2, Renal Carcinoma Antigen Ny-Ren-52; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ncoa1, Src1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Pgex-Kg
symmetry	Space Group: P 21 21 21	R_factor 0.200 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.642 90.889 129.651 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MUF, YT3 BindingDB	enzyme
Gene Ontology	Chain Function Process Component F, E
Primary reference	Identification of a potent synthetic FXR agonist with an unexpected mode of binding and activation., Soisson SM, Parthasarathy G, Adams AD, Sahoo S, Sitlani A, Sparrow C, Cui J, Becker JW, Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5337-42. Epub 2008 Apr 7. PMID:18391212

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk] Biological Unit Coordinates (3bej.pdb1.gz) 43 Kb Biological Unit Coordinates (3bej.pdb2.gz) 45 Kb LPC: Ligand-Protein Contacts for 3BEJ CSU: Contacts of Structural Units for 3BEJ Likely Quarternary Molecular Structure file(s) for 3BEJ Structure Factors (1738 Kb) Retrieve 3BEJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BEJ from S2C, [Save to disk] Re-refined 3bej structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BEJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BEJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BEJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bej_A] [3bej] [3bej_E] [3bej_F] [3bej_B] SWISS-PROT database: [Q15788] [Q96RI1] Domain organization of [NCOA1_HUMAN] [NR1H4_HUMAN] by SWISSPFAM Domain found in 3BEJ: [HOLI ] by SMART

Other resources with information on 3BEJ

Community annotation for 3BEJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---