3BFO Hydrolase date Nov 22, 2007
title Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1
authors J.R.Walker, M.Akutsu, D.R.Littler, Y.Li, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics Consortium (Sgc)
compound source
Molecule: Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 (Isoform 2);
Chain: A, B, C, D
Fragment: Ig-Like C2-Type 2 Domain: Residues 226-314 Of Isoform 2 (Q9udy8-2);
Synonym: Malt Lymphoma-Associated Translocation, Paracaspase;
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Malt1, Mlt
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.944 43.640 49.595 66.50 90.00 90.02
method X-Ray Diffractionresolution 1.15 Å
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3bfo.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (3bfo.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (3bfo.pdb3.gz) 36 Kb
  • Biological Unit Coordinates (3bfo.pdb4.gz) 37 Kb
  • CSU: Contacts of Structural Units for 3BFO
  • Likely Quarternary Molecular Structure file(s) for 3BFO
  • Structure Factors (1529 Kb)
  • Retrieve 3BFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BFO from S2C, [Save to disk]
  • Re-refined 3bfo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BFO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BFO, from MSDmotif at EBI
  • Fold representative 3bfo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bfo_D] [3bfo_A] [3bfo] [3bfo_C] [3bfo_B]
  • SWISS-PROT database: [Q9UDY8]
  • Domain organization of [MALT1_HUMAN] by SWISSPFAM
  • Domain found in 3BFO: [IG ] by SMART
  • Other resources with information on 3BFO
  • Community annotation for 3BFO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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