3BG1	Protein Transport, Hydrolase	date	Nov 23, 2007
title	Architecture Of A Coat For The Nuclear Pore Membrane
authors	A.Hoelz
compound		source
Molecule: Protein Sec13 Homolog Chain: A, D, E, H Synonym: Sec13-Related Protein, Sec13-Like Protein 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sec13, D3s1231e, Sec13l1, Sec13r Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus (De3)-Ril Expression_system_vector_type: Pet Expression_system_plasmid: Pet24b
Molecule: Nucleoporin Nup145 Chain: B, C, F, G Fragment: Nucleoporin Nup145c Synonym: Nuclear Pore Protein Nup145 Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Nup145, Rat10 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus (De3)-Ril Expression_system_vector_type: Pet Expression_system_plasmid: Pet-Duet1
symmetry	Space Group: C 2 2 21	R_factor 0.249 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 181.367 216.786 192.578 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand		enzyme	Hydrolase E.C.3.4.21 BRENDA
note	3BG1 is a representative structure
Gene Ontology	Chain Function Process Component A, E, H, D COPII vesicle coating intracellular transport of v... cargo loading into COPII-coa... COPII-coated vesicle budding... F, B, C, G
Primary reference	Architecture of a coat for the nuclear pore membrane., Hsia KC, Stavropoulos P, Blobel G, Hoelz A, Cell. 2007 Dec 28;131(7):1313-26. PMID:18160040

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (425 Kb) [Save to disk] Biological Unit Coordinates (3bg1.pdb1.gz) 419 Kb Biological Unit Coordinates (3bg1.pdb2.gz) 212 Kb Biological Unit Coordinates (3bg1.pdb3.gz) 213 Kb Biological Unit Coordinates (3bg1.pdb4.gz) 110 Kb Biological Unit Coordinates (3bg1.pdb5.gz) 107 Kb Biological Unit Coordinates (3bg1.pdb6.gz) 111 Kb Biological Unit Coordinates (3bg1.pdb7.gz) 108 Kb CSU: Contacts of Structural Units for 3BG1 Likely Quarternary Molecular Structure file(s) for 3BG1 Structure Factors (770 Kb) Retrieve 3BG1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BG1 from S2C, [Save to disk] Re-refined 3bg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BG1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BG1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BG1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bg1_B] [3bg1_H] [3bg1_C] [3bg1_F] [3bg1_G] [3bg1_E] [3bg1_D] [3bg1] [3bg1_A] SWISS-PROT database: [P49687] [P55735] Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Domain organization of [NU145_YEAST] [SEC13_HUMAN] by SWISSPFAM Domain found in 3BG1: [WD40 ] by SMART

Other resources with information on 3BG1

Community annotation for 3BG1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---