3BIM Transcription Repressor date Nov 30, 2007
title Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex Wi Bcor Bbd Corepressor Peptide
authors G.G.Prive, A.F.Ghetu
compound source
Molecule: B-Cell Lymphoma 6 Protein
Chain: A, B, C, D, E, F, G, H
Fragment: Btb Domain (Also Known As The Poz Domain)
Synonym: Bcl-6, Zinc Finger Protein 51, Laz-3 Protein, Bcl- Finger And Btb Domain-Containing Protein 27;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl6, Bcl5, Laz3, Zbtb27, Znf51
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bcl-6 Corepressor
Chain: I, J, K, L, M, N, O, P
Fragment: Bbd (Btb Binding Domain)
Synonym: Bcor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcor
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.219 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.550 150.550 312.250 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
Primary referenceStructure of a BCOR corepressor peptide in complex with the BCL6 BTB domain dimer., Ghetu AF, Corcoran CM, Cerchietti L, Bardwell VJ, Melnick A, Prive GG, Mol Cell. 2008 Feb 15;29(3):384-91. PMID:18280243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (3bim.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3bim.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (3bim.pdb3.gz) 48 Kb
  • Biological Unit Coordinates (3bim.pdb4.gz) 47 Kb
  • CSU: Contacts of Structural Units for 3BIM
  • Likely Quarternary Molecular Structure file(s) for 3BIM
  • Structure Factors (623 Kb)
  • Retrieve 3BIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BIM from S2C, [Save to disk]
  • Re-refined 3bim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BIM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BIM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bim_A] [3bim_G] [3bim_F] [3bim_N] [3bim_P] [3bim_O] [3bim_M] [3bim_C] [3bim_E] [3bim_J] [3bim_I] [3bim] [3bim_L] [3bim_B] [3bim_D] [3bim_H] [3bim_K]
  • SWISS-PROT database: [P41182] [Q6W2J9]
  • Domain organization of [BCL6_HUMAN] [BCOR_HUMAN] by SWISSPFAM
  • Domain found in 3BIM: [BTB ] by SMART
    • Other resources with information on 3BIM
  • Community annotation for 3BIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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