3BIN Cell Adhesion date Nov 30, 2007
title Structure Of The Dal-1 And Tslc1 (372-383) Complex
authors R.D.Busam, C.H.Arrowsmith, R.Collins, L.G.Dahlgren, A.M.Edwards, A.Flores, S.Graslund, M.Hammarstrom, A.Johansson, I.Johansson, A T.Karlberg, T.Kotenyova, L.Lehtio, M.Moche, M.E.Nilsson, P.Nordl T.Nyman, J.Sagemark, L.Svensson, A.G.Thorsell, L.Tresaugues, S.V Berg, J.Weigelt, M.Welin, H.Berglund, C.Persson, B.M.Hallberg
compound source
Molecule: Band 4.1-Like Protein 3
Chain: A
Fragment: Ferm Domain
Synonym: 4.1b, Differentially Expressed In Adenocarcinoma O Protein 1, Dal-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epb41l3, Dal1, Kiaa0987
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4

Molecule: Cell Adhesion Molecule 1
Chain: B
Fragment: Peptide From Cytoplasmic Domain, Unp Residues 400
Synonym: Immunoglobulin Superfamily Member 4, Nectin-Like P Necl-2, Tumor Suppressor In Lung Cancer 1, Tslc-1, Synaptic Adhesion Molecule, Spermatogenic Immunoglobulin Superfamily
Engineered: Yes

Synthetic: Yes
Other_details: Peptide Synthetic
symmetry Space Group: P 65
R_factor 0.179 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.000 135.000 50.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of tumor suppressor in lung cancer 1 (TSLC1) binding to differentially expressed in adenocarcinoma of the lung (DAL-1/4.1B)., Busam RD, Thorsell AG, Flores A, Hammarstrom M, Persson C, Obrink B, Hallberg BM, J Biol Chem. 2010 Dec 3. PMID:21131357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3bin.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (3bin.pdb2.gz) 3 Kb
  • Biological Unit Coordinates (3bin.pdb3.gz) 52 Kb
  • CSU: Contacts of Structural Units for 3BIN
  • Likely Quarternary Molecular Structure file(s) for 3BIN
  • Structure Factors (359 Kb)
  • Retrieve 3BIN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BIN from S2C, [Save to disk]
  • Re-refined 3bin structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BIN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BIN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BIN, from MSDmotif at EBI
  • Fold representative 3bin from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bin] [3bin_A] [3bin_B]
  • SWISS-PROT database: [Q9BY67] [Q9Y2J2]
  • Domain organization of [CADM1_HUMAN] [E41L3_HUMAN] by SWISSPFAM
  • Domains found in 3BIN: [B41] [FERM_C ] by SMART
  • Other resources with information on 3BIN
  • Community annotation for 3BIN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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