3BIY Transferase date Dec 02, 2007
title Crystal Structure Of P300 Histone Acetyltransferase Domain I With A Bisubstrate Inhibitor, Lys-Coa
authors X.Liu, L.Wang, K.Zhao, P.R.Thompson, Y.Hwang, R.Marmorstein, P.A.C
compound source
Molecule: Histone Acetyltransferase P300
Chain: A
Fragment: Acetyltransferase Domain
Synonym: E1a-Associated Protein P300
Ec: 2.3.1.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ep300, P300
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb2
symmetry Space Group: P 43
R_factor 0.182 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.513 61.513 101.153 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 01K, BR enzyme Transferase E.C.2.3.1.48 BRENDA
note 3BIY (Molecule of the Month:pdb122)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structural basis of protein acetylation by the p300/CBP transcriptional coactivator., Liu X, Wang L, Zhao K, Thompson PR, Hwang Y, Marmorstein R, Cole PA, Nature. 2008 Feb 14;451(7180):846-50. PMID:18273021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3biy.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3BIY
  • CSU: Contacts of Structural Units for 3BIY
  • Likely Quarternary Molecular Structure file(s) for 3BIY
  • Structure Factors (1764 Kb)
  • Retrieve 3BIY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BIY from S2C, [Save to disk]
  • Re-refined 3biy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BIY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BIY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BIY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3biy] [3biy_A]
  • SWISS-PROT database: [Q09472]
  • Domain organization of [EP300_HUMAN] by SWISSPFAM
  • Domain found in 3BIY: [KAT11 ] by SMART
  • Other resources with information on 3BIY
  • Community annotation for 3BIY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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