3BJX Hydrolase date Dec 05, 2007
title Structure Of A Group I Haloacid Dehalogenase From Pseudomonas Putida Strain Pp3
authors J.W.Schmidberger, M.C.J.Wilce
compound source
Molecule: Halocarboxylic Acid Dehalogenase Dehi
Chain: A, B, C, D
Ec: 3.8.1.2
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Strain: Pp3
Gene: Dehi
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nova Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.323 111.864 75.181 90.00 93.71 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, SO4 enzyme Hydrolase E.C.3.8.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe Crystal Structure of DehI Reveals a New alpha-Haloacid Dehalogenase Fold and Active-Site Mechanism., Schmidberger JW, Wilce JA, Weightman AJ, Whisstock JC, Wilce MC, J Mol Biol. 2008 Feb 29;. PMID:18353360
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (3bjx.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (3bjx.pdb2.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3BJX
  • CSU: Contacts of Structural Units for 3BJX
  • Likely Quarternary Molecular Structure file(s) for 3BJX
  • Structure Factors (792 Kb)
  • Retrieve 3BJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BJX from S2C, [Save to disk]
  • Re-refined 3bjx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BJX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BJX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bjx_C] [3bjx_D] [3bjx] [3bjx_B] [3bjx_A]
  • SWISS-PROT database: [Q8GJ84]
  • Domain organization of [Q8GJ84_PSEPU] by SWISSPFAM
  • Other resources with information on 3BJX
  • Community annotation for 3BJX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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