3BL9	Hydrolase	date	Dec 10, 2007
title	Synthetic Gene Encoded Dcps Bound To Inhibitor Dg157493
authors	B.L.Staker, J.Christensen, L.Stewart, Accelerated Technologies For Gene To 3d Structure (Atcg3d)
compound		source
Molecule: Scavenger Mrna-Decapping Enzyme Dcps Chain: A, B Fragment: Unp Residues 38-337 Synonym: Dcs-1, Hint- Related 7megmp-Directed Hydrolase, Hi Triad Protein Member 5, Hint-5; Ec: 3.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dcps, Dcs1, Hint5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbad
symmetry	Space Group: P 1	R_factor 0.174 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.406 56.867 59.504 62.35 77.93 79.54
method	X-Ray Diffraction	resolution	1.80 Å
ligand	DD2 BindingDB	enzyme	Hydrolase E.C.3 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	DcpS as a Therapeutic Target for Spinal Muscular Atrophy., Singh J, Salcius M, Liu SW, Staker BL, Mishra R, Thurmond J, Michaud G, Mattoon DR, Printen J, Christensen J, Bjornsson JM, Pollok BA, Kiledjian M, Stewart L, Jarecki J, Gurney ME, ACS Chem Biol. 2008 Oct 8. PMID:18839960

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (3bl9.pdb1.gz) 104 Kb LPC: Ligand-Protein Contacts for 3BL9 CSU: Contacts of Structural Units for 3BL9 Likely Quarternary Molecular Structure file(s) for 3BL9 Structure Factors (730 Kb) Retrieve 3BL9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BL9 from S2C, [Save to disk] Re-refined 3bl9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BL9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BL9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BL9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bl9_B] [3bl9_A] [3bl9] SWISS-PROT database: [Q96C86] Domain organization of [DCPS_HUMAN] by SWISSPFAM

Other resources with information on 3BL9

Community annotation for 3BL9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---