3BMY Chaperone date Dec 13, 2007
title Discovery Of Benzisoxazoles As Potent Inhibitors Of Chaperone Hsp90
authors A.Gopalsamy, M.Shi, E.M.Vogan, J.Golas, J.Jacob, J.Johnson, F.Lee, R.Nilakantan, R.Peterson, K.Svenson, M.S.Tam, Y.Wen, R.Chopra, J.Ellingboe, K.Arndt, F.Boschelli
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain, Unp Residues 10-236
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29a
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.721 42.462 54.333 90.00 102.22 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CXZ BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of benzisoxazoles as potent inhibitors of chaperone heat shock protein 90., Gopalsamy A, Shi M, Golas J, Vogan E, Jacob J, Johnson M, Lee F, Nilakantan R, Petersen R, Svenson K, Chopra R, Tam MS, Wen Y, Ellingboe J, Arndt K, Boschelli F, J Med Chem. 2008 Feb 14;51(3):373-5. Epub 2008 Jan 16. PMID:18197612
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3bmy.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3BMY
  • CSU: Contacts of Structural Units for 3BMY
  • Likely Quarternary Molecular Structure file(s) for 3BMY
  • Structure Factors (474 Kb)
  • Retrieve 3BMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BMY from S2C, [Save to disk]
  • Re-refined 3bmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BMY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BMY, from MSDmotif at EBI
  • Fold representative 3bmy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bmy_A] [3bmy]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 3BMY: [HATPase_c ] by SMART
  • Alignments of the sequence of 3BMY with the sequences similar proteins can be viewed for 3BMY's classification [HS90A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HS90A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3BMY
  • Community annotation for 3BMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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