3BN0 Ribosome date Dec 13, 2007
title The Ribosomal Protein S16 From Aquifex Aeolicus
authors O.Pylypenko, A.Rak
compound source
Molecule: 30s Ribosomal Protein S16
Chain: A
Engineered: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Gene: Rpsp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosettatm 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3a
symmetry Space Group: P 31 2 1
R_factor 0.238 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.500 54.500 74.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExtreme Temperature Tolerance of a Hyperthermophilic Protein Coupled to Residual Structure in the Unfolded State., Wallgren M, Aden J, Pylypenko O, Mikaelsson T, Johansson LB, Rak A, Wolf-Watz M, J Mol Biol. 2008 Apr 8;. PMID:18471828
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (3bn0.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 3BN0
  • CSU: Contacts of Structural Units for 3BN0
  • Likely Quarternary Molecular Structure file(s) for 3BN0
  • Structure Factors (60 Kb)
  • Retrieve 3BN0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BN0 from S2C, [Save to disk]
  • Re-refined 3bn0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BN0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BN0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BN0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bn0] [3bn0_A]
  • SWISS-PROT database: [O66523]
  • Domain organization of [RS16_AQUAE] by SWISSPFAM
  • Other resources with information on 3BN0
  • Community annotation for 3BN0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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