3BNN Rna date Dec 14, 2007
title Crystal Structure Of The Homo Sapiens Mitochondrial Ribosomal Decoding Site
authors J.Kondo, E.Westhof
compound source
Molecule: A Site Of Human Ribosome
Chain: A, B, C, D
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 1
R_factor 0.238 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.610 44.500 52.360 68.77 71.30 67.72
method X-Ray Diffractionresolution 2.00 Å
Primary referenceThe bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates., Kondo J, Westhof E, Nucleic Acids Res. 2008 May;36(8):2654-66. Epub 2008 Mar 16. PMID:18346970
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3bnn.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (3bnn.pdb2.gz) 19 Kb
  • CSU: Contacts of Structural Units for 3BNN
  • Likely Quarternary Molecular Structure file(s) for 3BNN
  • Structure Factors (119 Kb)
  • Retrieve 3BNN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BNN from S2C, [Save to disk]
  • Re-refined 3bnn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BNN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BNN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BNN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bnn_D] [3bnn_C] [3bnn_A] [3bnn] [3bnn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3BNN
  • Community annotation for 3BNN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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