3BUC X-ray structure of human ABH2 bound to dsDNA with Mn(II) and 2KG date
authors Yang, C.G., Yi, C., He, C.
compound source
symmetry
R_factor
R_Free 0.28673
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.59
ligand AKG, MA7, MN, XL3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA., Yang CG, Yi C, Duguid EM, Sullivan CT, Jian X, Rice PA, He C, Nature. 2008 Apr 24;452(7190):961-5. PMID:18432238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3buc.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3BUC
  • CSU: Contacts of Structural Units for 3BUC
  • Likely Quarternary Molecular Structure file(s) for 3BUC
  • Structure Factors (167 Kb)
  • Retrieve 3BUC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BUC from S2C, [Save to disk]
  • Re-refined 3buc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BUC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BUC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BUC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3buc_A] [3buc] [3buc_B] [3buc_C]
  • SWISS-PROT database: [Q6NS38]
  • Domain organization of [ALKB2_HUMAN] by SWISSPFAM
  • Other resources with information on 3BUC
  • Community annotation for 3BUC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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