3BVH	Blood Clotting	date	Jan 07, 2008
title	Crystal Structure Of Recombinant Gammad364a Fibrinogen Fragm The Peptide Ligand Gly-Pro-Arg-Pro-Amide
authors	S.R.Bowley, B.K.Merenbloom, L.Betts, N.Okumura, A.Heroux, O.V.Gor S.T.Lord
compound		source
Molecule: Fibrinogen Alpha Chain Chain: A, D Fragment: Residues 148-209 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fga Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmlp
Molecule: Fibrinogen Beta Chain Chain: B, E Fragment: Residues 191-488 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgb Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmlp
Molecule: Fibrinogen Gamma Chain Chain: C, F Fragment: Residues 128-420 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgg Expression_system: Cricetulus Griseus Expression_system_taxid: 10029 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmlp
Molecule: 4-Mer Peptide Gprp Chain: G, I, H, J Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthetic Peptide
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.844 94.913 225.754 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	CA, FUC, NAG	enzyme
Gene Ontology	Chain Function Process Component A, D E, B F, C
Primary reference	Polymerization-defective fibrinogen variant gammaD364A binds knob "A" peptide mimic., Bowley SR, Merenbloom BK, Okumura N, Betts L, Heroux A, Gorkun OV, Lord ST, Biochemistry. 2008 Aug 19;47(33):8607-13. Epub 2008 Jul 22. PMID:18642883

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk] Biological Unit Coordinates (3bvh.pdb1.gz) 115 Kb Biological Unit Coordinates (3bvh.pdb2.gz) 111 Kb LPC: Ligand-Protein Contacts for 3BVH CSU: Contacts of Structural Units for 3BVH Likely Quarternary Molecular Structure file(s) for 3BVH Structure Factors (571 Kb) Retrieve 3BVH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BVH from S2C, [Save to disk] Re-refined 3bvh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BVH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BVH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BVH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bvh_C] [3bvh_E] [3bvh_F] [3bvh_B] [3bvh_J] [3bvh_H] [3bvh_G] [3bvh_I] [3bvh_A] [3bvh] [3bvh_D] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 3BVH: [FBG ] by SMART

Other resources with information on 3BVH

Community annotation for 3BVH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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