3BVN	Immune System	date	Jan 07, 2008
title	High Resolution Crystal Structure Of Hla-B1402 In Complex W Latent Membrane Protein 2 Peptide (Lmp2) Of Epstein-Barr Vi
authors	P.Kumar, A.Vahedi-Faridi, W.Saenger, B.Uchanska-Ziegler, A.Ziegl
compound		source
Molecule: Hla Class I Histocompatibility Antigen, B1402 Al Chain: A, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Hla-B Expression_system: Escherichia Coli Expression_system_strain: Jm109 Expression_system_plasmid: Phn
Molecule: Beta-2-Microglobulin Chain: B, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: B2m Expression_system: Escherichia Coli Expression_system_strain: Xa90 Expression_system_plasmid: Phn
Molecule: Latent Membrane Protein 2 Peptide Chain: C, F Engineered: Yes		Synthetic: Yes Other_details: Peptide Plmp2 Chemically Synthesized
symmetry	Space Group: P 1 21 1	R_factor 0.240 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.383 79.953 105.440 90.00 99.51 90.00
method	X-Ray Diffraction	resolution	2.55 Å
Gene Ontology	Chain Function Process Component E, B cellular response to iron io...
Primary reference	Structural basis for T cell alloreactivity among three HLA-B14 and HLA-B27 antigens., Kumar P, Vahedi-Faridi A, Saenger W, Merino E, Lopez de Castro JA, Uchanska-Ziegler B, Ziegler A, J Biol Chem. 2009 Jul 18. PMID:19617632

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (3bvn.pdb1.gz) 66 Kb Biological Unit Coordinates (3bvn.pdb2.gz) 67 Kb CSU: Contacts of Structural Units for 3BVN Likely Quarternary Molecular Structure file(s) for 3BVN Structure Factors (187 Kb) Retrieve 3BVN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BVN from S2C, [Save to disk] Re-refined 3bvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BVN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BVN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BVN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bvn_A] [3bvn_F] [3bvn_C] [3bvn_D] [3bvn_B] [3bvn] [3bvn_E] SWISS-PROT database: [P61769] [P13285] [Q56H30] Domain organization of [B2MG_HUMAN] [LMP2_EBVB9] [Q56H30_HUMAN] by SWISSPFAM Domain found in 3BVN: [IGc1 ] by SMART

Other resources with information on 3BVN

Community annotation for 3BVN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---