3BWE Chaperone date Jan 09, 2008
title Crystal Structure Of Aggregated Form Of Dj1
authors S.S.Cha
compound source
Molecule: Protein Dj-1
Chain: A, B, C, D, E, F, G
Synonym: Oncogene Dj1, Parkinson Disease Protein 7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.282
length a length b length c angle alpha angle beta angle gamma
193.616 102.582 85.535 90.00 113.69 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE, PO4 enzyme
F, A, D, C, G, E, B
  • transcription coactivator ac...
  • peroxiredoxin activity
  • negative regulation of prote...
  • positive regulation of pepti...
  • dopamine uptake involved in ...
  • positive regulation of L-dop...

  • Primary referenceCrystal structure of filamentous aggregates of human DJ-1 formed in an inorganic phosphate-dependent manner., Cha SS, Jung HI, Jeon H, An YJ, Kim IK, Yun S, Ahn HJ, Chung KC, Lee SH, Suh PG, Kang SO, J Biol Chem. 2008 Dec 5;283(49):34069-75. Epub 2008 Oct 14. PMID:18922803
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (3bwe.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (3bwe.pdb2.gz) 61 Kb
  • Biological Unit Coordinates (3bwe.pdb3.gz) 59 Kb
  • Biological Unit Coordinates (3bwe.pdb4.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3BWE
  • CSU: Contacts of Structural Units for 3BWE
  • Likely Quarternary Molecular Structure file(s) for 3BWE
  • Structure Factors (682 Kb)
  • Retrieve 3BWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BWE from S2C, [Save to disk]
  • Re-refined 3bwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BWE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BWE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BWE, from MSDmotif at EBI
  • Fold representative 3bwe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bwe_D] [3bwe_E] [3bwe] [3bwe_A] [3bwe_C] [3bwe_G] [3bwe_B] [3bwe_F]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Other resources with information on 3BWE
  • Community annotation for 3BWE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science