3BWY Transferase date Jan 10, 2008
title Crystal Structure Of Human 108m Catechol O-Methyltransferase With S-Adenosylmethionine And Inhibitor Dinitrocatechol
authors K.Rutherford, I.Le Trong, R.E.Stenkamp, W.W.Parson
compound source
Molecule: Comt Protein
Chain: A
Synonym: (Catechol-O-Methyltransferase, Isoform Cra_a
Ec: 2.1.1.6
Engineered: Yes
Mutation: Yes
Other_details: V108m Polymorphism
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Comt
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.124 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.249 66.163 68.519 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand DNC, MG, MPD, SAM enzyme Transferase E.C.2.1.1.6 BRENDA
note 3BWY is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of Human 108V and 108M Catechol O-Methyltransferase., Rutherford K, Le Trong I, Stenkamp RE, Parson WW, J Mol Biol. 2008 Apr 23;. PMID:18486144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3bwy.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3BWY
  • CSU: Contacts of Structural Units for 3BWY
  • Likely Quarternary Molecular Structure file(s) for 3BWY
  • Structure Factors (648 Kb)
  • Retrieve 3BWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BWY from S2C, [Save to disk]
  • Re-refined 3bwy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BWY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BWY, from MSDmotif at EBI
  • Fold representative 3bwy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bwy_A] [3bwy]
  • SWISS-PROT database: [P21964]
  • Domain organization of [COMT_HUMAN] by SWISSPFAM
  • Other resources with information on 3BWY
  • Community annotation for 3BWY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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