3BYI	Signaling Protein	date	Jan 16, 2008
title	Crystal Structure Of Human Rho Gtpase Activating Protein 15
authors	L.Shrestha, J.Tickle, J.Elkins, N.Burgess-Brown, C.Johansson, E.Papagrigoriou, K.Kavanagh, A.C.W.Pike, E.Ugochukwu, J.Uppenbe Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, D.Doyle, Structur Genomics Consortium (Sgc)
compound		source
Molecule: Rho Gtpase Activating Protein 15 Chain: A, B, C, D Fragment: Residues 262-473 Synonym: Rho Gtpase Activating Protein 15, Isoform Cra_d Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Arhgap15 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)(R3)(Prare2) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 21 21 2	R_factor 0.188 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.618 130.142 62.477 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk] Biological Unit Coordinates (3byi.pdb1.gz) 35 Kb Biological Unit Coordinates (3byi.pdb2.gz) 35 Kb Biological Unit Coordinates (3byi.pdb3.gz) 35 Kb Biological Unit Coordinates (3byi.pdb4.gz) 34 Kb Biological Unit Coordinates (3byi.pdb5.gz) 133 Kb CSU: Contacts of Structural Units for 3BYI Likely Quarternary Molecular Structure file(s) for 3BYI Structure Factors (729 Kb) Retrieve 3BYI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BYI from S2C, [Save to disk] Re-refined 3byi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BYI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BYI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BYI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3byi_C] [3byi_B] [3byi] [3byi_D] [3byi_A] SWISS-PROT database: [Q53QZ3] Domain organization of [RHG15_HUMAN] by SWISSPFAM Domain found in 3BYI: [RhoGAP ] by SMART

Other resources with information on 3BYI

Community annotation for 3BYI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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