3BYS	Transferase	date	Jan 16, 2008
title	Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
authors	X.Huang
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Lck Chain: A Fragment: Kinase Domain Synonym: P56-Lck, Lymphocyte Cell-Specific Protein-Tyrosine Lsk, T Cell-Specific Protein-Tyrosine Kinase; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lck Expression_system: Baculovirus Expression_system_cell_line: Insect Cell
symmetry	Space Group: P 21 21 21	R_factor 0.246 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.000 73.700 101.470 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	AM5 BindingDB	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-guided design of aminopyrimidine amides as potent, selective inhibitors of lymphocyte specific kinase: synthesis, structure-activity relationships, and inhibition of in vivo T cell activation., DiMauro EF, Newcomb J, Nunes JJ, Bemis JE, Boucher C, Chai L, Chaffee SC, Deak HL, Epstein LF, Faust T, Gallant P, Gore A, Gu Y, Henkle B, Hsieh F, Huang X, Kim JL, Lee JH, Martin MW, McGowan DC, Metz D, Mohn D, Morgenstern KA, Oliveira-dos-Santos A, Patel VF, Powers D, Rose PE, Schneider S, Tomlinson SA, Tudor YY, Turci SM, Welcher AA, Zhao H, Zhu L, Zhu X, J Med Chem. 2008 Mar 27;51(6):1681-94. Epub 2008 Mar 6. PMID:18321037

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3bys.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 3BYS CSU: Contacts of Structural Units for 3BYS Likely Quarternary Molecular Structure file(s) for 3BYS Retrieve 3BYS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BYS from S2C, [Save to disk]

View 3BYS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BYS

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BYS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bys] [3bys_A] SWISS-PROT database: [P06239] Domain organization of [LCK_HUMAN] by SWISSPFAM Domain found in 3BYS: [TyrKc ] by SMART

Other resources with information on 3BYS

Community annotation for 3BYS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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