3BZU Oxidoreductase date Jan 18, 2008
title Crystal Structure Of Human 11-Beta-Hydroxysteroid Dehydrogen In Complex With Nadp And Thiazolone Inhibitor
authors X.Min, A.Sudom, H.Xu, Z.Wang, N.P.Walker
compound source
Molecule: Corticosteroid 11-Beta-Dehydrogenase Isozyme 1
Chain: A, B, C, D
Fragment: Unp Residues 24-292
Synonym: 11-Dh, 11-Beta-Hydroxysteroid Dehydrogenase 1, 11-
Ec: 1.1.1.146
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd11b1, Hsd11, Hsd11l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta1(De3)
Expression_system_vector_type: Pbad-Thioe
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.020 153.008 73.725 90.00 92.16 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand A21, NAP BindingDB enzyme Oxidoreductase E.C.1.1.1.146 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural characterization and pharmacodynamic effects of an orally active 11beta-hydroxysteroid dehydrogenase type 1 inhibitor., Hale C, Veniant M, Wang Z, Chen M, McCormick J, Cupples R, Hickman D, Min X, Sudom A, Xu H, Matsumoto G, Fotsch C, St Jean DJ Jr, Wang M, Chem Biol Drug Des. 2008 Jan;71(1):36-44. Epub 2007 Dec 7. PMID:18069989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (3bzu.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 3BZU
  • CSU: Contacts of Structural Units for 3BZU
  • Likely Quarternary Molecular Structure file(s) for 3BZU
  • Structure Factors (2720 Kb)
  • Retrieve 3BZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BZU from S2C, [Save to disk]
  • Re-refined 3bzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BZU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BZU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bzu] [3bzu_B] [3bzu_D] [3bzu_C] [3bzu_A]
  • SWISS-PROT database: [P28845]
  • Domain organization of [DHI1_HUMAN] by SWISSPFAM
  • Other resources with information on 3BZU
  • Community annotation for 3BZU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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