3C0G Transferase date Jan 20, 2008
title Cask Cam-Kinase Domain- 3'-Amp Complex, P1 Form
authors M.C.Wahl
compound source
Molecule: Peripheral Plasma Membrane Protein Cask
Chain: A, B
Fragment: Cam-Kinase Domain
Synonym: Hcask, Calciumcalmodulin-Dependent Serine Protein Lin-2 Homolog;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cask
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6t
symmetry Space Group: P 1
R_factor 0.208 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.328 60.267 60.553 90.00 106.49 105.80
method X-Ray Diffractionresolution 2.19 Å
ligand 3AM enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCASK Functions as a Mg2+-independent neurexin kinase., Mukherjee K, Sharma M, Urlaub H, Bourenkov GP, Jahn R, Sudhof TC, Wahl MC, Cell. 2008 Apr 18;133(2):328-39. PMID:18423203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3c0g.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3c0g.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3C0G
  • CSU: Contacts of Structural Units for 3C0G
  • Likely Quarternary Molecular Structure file(s) for 3C0G
  • Structure Factors (279 Kb)
  • Retrieve 3C0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C0G from S2C, [Save to disk]
  • Re-refined 3c0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C0G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3C0G, from MSDmotif at EBI
  • Fold representative 3c0g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c0g_B] [3c0g] [3c0g_A]
  • SWISS-PROT database: [O14936]
  • Domain organization of [CSKP_HUMAN] by SWISSPFAM
  • Domain found in 3C0G: [S_TKc ] by SMART
  • Alignments of the sequence of 3C0G with the sequences similar proteins can be viewed for 3C0G's classification [CSKP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CSKP_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3C0G
  • Community annotation for 3C0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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