3C11 Chaperone Antibiotic date Jan 21, 2008
title Yeast Hsp82 N-Terminal Domain-Geldanamycin Complex: Effects 98-99 Ks-Aa
authors R.M.Immormino, D.T.Gewirth
compound source
Molecule: Atp-Dependent Molecular Chaperone Hsp82
Chain: A
Fragment: N-Terminal Domain (Residues 1-220)
Synonym: Heat Shock Protein Hsp90 Heat-Inducible Isoform, 8 Shock Protein;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Hsp82, Hsp90
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b-Yhsp82(1-220)
symmetry Space Group: P 43 2 2
R_factor 0.191 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.150 74.150 110.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand GDM, GOL BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (3c11.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3C11
  • CSU: Contacts of Structural Units for 3C11
  • Likely Quarternary Molecular Structure file(s) for 3C11
  • Structure Factors (297 Kb)
  • Retrieve 3C11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C11 from S2C, [Save to disk]
  • Re-refined 3c11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C11
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C11, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c11_A] [3c11]
  • SWISS-PROT database: [P02829]
  • Domain organization of [HSP82_YEAST] by SWISSPFAM
  • Domain found in 3C11: [HATPase_c ] by SMART
    • Other resources with information on 3C11
  • Community annotation for 3C11 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science