3C28 Recombination Dna date Jan 24, 2008
title Crystal Structure Of The Product Synapse Complex
authors K.Ghosh, G.D.Van Duyne
compound source
Molecule: Loxp Dna, Chain C
Chain: C
Engineered: Yes
 Synthetic: Yes
Other_details: Loxp Dna From Phage P1

Molecule: Loxp Dna, Chain D
Chain: D
Engineered: Yes
Synthetic: Yes
Other_details: Loxp Dna From Phage P1

Molecule: Recombinase Cre
Chain: A, B
Engineered: Yes
Organism_scientific: Bacteriophage P1
Gene: Cre
symmetry Space Group: C 2 2 21
R_factor 0.225 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.254 122.453 178.991 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (3c28.pdb1.gz) 257 Kb
  • CSU: Contacts of Structural Units for 3C28
  • Likely Quarternary Molecular Structure file(s) for 3C28
  • Structure Factors (960 Kb)
  • Retrieve 3C28 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C28 from S2C, [Save to disk]
  • Re-refined 3c28 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C28 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C28
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C28, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c28] [3c28_B] [3c28_C] [3c28_A] [3c28_D]
  • SWISS-PROT database: [P06956]
  • Domain organization of [RECR_BPP1] by SWISSPFAM
    • Other resources with information on 3C28
  • Community annotation for 3C28 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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