3C3D	Transferase	date	Jan 28, 2008
title	Crystal Structure Of 2-Phospho-(S)-Lactate Transferase From Methanosarcina Mazei In Complex With Fo And Phosphate. Northeast Structural Genomics Consortium Target Mar46
authors	F.Forouhar, M.Abashidze, H.Xu, L.L.Grochowski, J.Seetharaman, M.Hussain, A.P.Kuzin, Y.Chen, W.Zhou, R.Xiao, T.B.Acton, G.T.Montelione, A.Galinier, R.H.White, L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound		source
Molecule: 2-Phospho-L-Lactate Transferase Chain: A, B, C, D Synonym: Lppg:Fo, 2-Phospho-(S)-Lactate Transferase Ec: 2.7.8.- Engineered: Yes		Organism_scientific: Methanosarcina Mazei Go1 Organism_taxid: 192952 Strain: Go1 Dsm 3647 Goe1 Jcm 11883 Ocm 88 Atcc: Baa-159 Gene: Cofd, Mm_1874 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)+Magic Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
symmetry	Space Group: P 32	R_factor 0.195 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 185.278 185.278 67.789 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	FO1, MSE, PO4	enzyme	Transferase E.C.2.7.8 BRENDA
Gene	MM
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Molecular insights into the biosynthesis of the F420 coenzyme., Forouhar F, Abashidze M, Xu H, Grochowski LL, Seetharaman J, Hussain M, Kuzin A, Chen Y, Zhou W, Xiao R, Acton TB, Montelione GT, Galinier A, White RH, Tong L, J Biol Chem. 2008 Feb 5;. PMID:18252724

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk] Biological Unit Coordinates (3c3d.pdb1.gz) 105 Kb Biological Unit Coordinates (3c3d.pdb2.gz) 105 Kb LPC: Ligand-Protein Contacts for 3C3D CSU: Contacts of Structural Units for 3C3D Likely Quarternary Molecular Structure file(s) for 3C3D Structure Factors (2669 Kb) Retrieve 3C3D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C3D from S2C, [Save to disk] Re-refined 3c3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3C3D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3C3D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C3D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c3d_D] [3c3d] [3c3d_B] [3c3d_A] [3c3d_C] SWISS-PROT database: [Q8PVT6] Domain organization of [COFD_METMA] by SWISSPFAM

Other resources with information on 3C3D

Community annotation for 3C3D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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