3C4F	Transferase	date	Jan 29, 2008
title	Fgfr Tyrosine Kinase Domain In Complex With 3-(3-Methoxybenz Azaindole
authors	K.Y.J.Zhang, W.Wang
compound		source
Molecule: Basic Fibroblast Growth Factor Receptor 1 Chain: A, B Fragment: Kinase Domain Synonym: Fgfr-1, Bfgf-R, Fms-Like Tyrosine Kinase 2, C-Fgr, Antigen; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgfr1, Fgfbr, Flg, Flt2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Vector Expression_system_vector: Pet29a
symmetry	Space Group: C 1 2 1	R_factor 0.211 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 208.190 57.623 65.368 90.00 107.62 90.00
method	X-Ray Diffraction	resolution	2.07 Å
ligand	C4F	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity., Tsai J, Lee JT, Wang W, Zhang J, Cho H, Mamo S, Bremer R, Gillette S, Kong J, Haass NK, Sproesser K, Li L, Smalley KS, Fong D, Zhu YL, Marimuthu A, Nguyen H, Lam B, Liu J, Cheung I, Rice J, Suzuki Y, Luu C, Settachatgul C, Shellooe R, Cantwell J, Kim SH, Schlessinger J, Zhang KY, West BL, Powell B, Habets G, Zhang C, Ibrahim PN, Hirth P, Artis DR, Herlyn M, Bollag G, Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3041-6. Epub 2008 Feb 19. PMID:18287029

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (3c4f.pdb1.gz) 52 Kb Biological Unit Coordinates (3c4f.pdb2.gz) 50 Kb Biological Unit Coordinates (3c4f.pdb3.gz) 101 Kb LPC: Ligand-Protein Contacts for 3C4F CSU: Contacts of Structural Units for 3C4F Likely Quarternary Molecular Structure file(s) for 3C4F Retrieve 3C4F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C4F from S2C, [Save to disk]

View 3C4F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3C4F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C4F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c4f_A] [3c4f_B] [3c4f] SWISS-PROT database: [P11362] Belongs to the basigin (basigin) family according to TCDB. Domain organization of [FGFR1_HUMAN] by SWISSPFAM Domain found in 3C4F: [TyrKc ] by SMART

Other resources with information on 3C4F

Community annotation for 3C4F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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