3C5H Signaling Protein date Jan 31, 2008
title Crystal Structure Of The Ras Homolog Domain Of Human Grlf1 (P190rhogap)
authors L.Shen, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M.Edward C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium (Sgc)
compound source
Molecule: Glucocorticoid Receptor Dna-Binding Factor 1
Chain: A
Fragment: Ras Homolog Domain: Residues 13-249
Synonym: Glucocorticoid Receptor Repression Factor 1, Grf-1 P190a, P190-A;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grlf1, Grf1, Kiaa1722
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: I 4
R_factor 0.205 R_Free 0.247
length a length b length c angle alpha angle beta angle gamma
108.959 108.959 51.319 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GNP, MG, UNX enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3c5h.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3C5H
  • CSU: Contacts of Structural Units for 3C5H
  • Likely Quarternary Molecular Structure file(s) for 3C5H
  • Structure Factors (1068 Kb)
  • Retrieve 3C5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C5H from S2C, [Save to disk]
  • Re-refined 3c5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C5H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3C5H, from MSDmotif at EBI
  • Fold representative 3c5h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c5h] [3c5h_A]
  • SWISS-PROT database: [Q9NRY4]
  • Domain organization of [GRLF1_HUMAN] by SWISSPFAM
  • Other resources with information on 3C5H
  • Community annotation for 3C5H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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