3C6W Metal Binding Protein date Feb 05, 2008
title Crystal Structure Of The Ing5 Phd Finger In Complex With H3k Peptide
authors K.S.Champagne, P.V.Pena, K.Johnson, T.G.Kutateladze
compound source
Molecule: Inhibitor Of Growth Protein 5
Chain: A, C
Fragment: Unp Residues 184-236
Synonym: P28ing5
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ing5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: H3k4me3 Histone Peptide
Chain: B, D
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic H3k4me3 Histone Peptide
symmetry Space Group: P 43
R_factor 0.186 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.140 68.140 28.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand M3L, ZN enzyme
note 3C6W is a representative structure
Primary referenceThe crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide., Champagne KS, Saksouk N, Pena PV, Johnson K, Ullah M, Yang XJ, Cote J, Kutateladze TG, Proteins. 2008 Jul 11;72(4):1371-1376. PMID:18623064
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (3c6w.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (3c6w.pdb2.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 3C6W
  • CSU: Contacts of Structural Units for 3C6W
  • Likely Quarternary Molecular Structure file(s) for 3C6W
  • Structure Factors (133 Kb)
  • Retrieve 3C6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C6W from S2C, [Save to disk]
  • Re-refined 3c6w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C6W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C6W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c6w_A] [3c6w_C] [3c6w_D] [3c6w_B] [3c6w]
  • SWISS-PROT database: [Q8WYH8]
  • Domain organization of [ING5_HUMAN] by SWISSPFAM
  • Domain found in 3C6W: [PHD ] by SMART
    • Other resources with information on 3C6W
  • Community annotation for 3C6W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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