3C7Q	Transferase	date	Feb 08, 2008
title	Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
authors	F.Hilberg, G.J.Roth, M.Krssak, S.Kautschitsch, W.Sommergruber, U. Grunt, P.Garin-Chesa, G.Bader, A.Zoephel, J.Quant, A.Heckel, W.J.
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Kinase Domain Synonym: Vegfr-2, Kinase Insert Domain Receptor, Protein-Ty Kinase Receptor Flk-1, Cd309 Antigen; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: High5 Expression_system_cell_line: Sf9 Expression_system_vector_type: Vector Expression_system_vector: Pfb1
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.250 94.440 96.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CME, PTR, SO4, XIN BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	BIBF 1120: triple angiokinase inhibitor with sustained receptor blockade and good antitumor efficacy., Hilberg F, Roth GJ, Krssak M, Kautschitsch S, Sommergruber W, Tontsch-Grunt U, Garin-Chesa P, Bader G, Zoephel A, Quant J, Heckel A, Rettig WJ, Cancer Res. 2008 Jun 15;68(12):4774-82. PMID:18559524

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (3c7q.pdb1.gz) 54 Kb LPC: Ligand-Protein Contacts for 3C7Q CSU: Contacts of Structural Units for 3C7Q Structure Factors (159 Kb) Retrieve 3C7Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C7Q from S2C, [Save to disk] Re-refined 3c7q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3C7Q in 3D

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Visual 3D analysis of 3C7Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C7Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c7q] [3c7q_A] SWISS-PROT database: [P35968] Domain organization of [VGFR2_HUMAN] by SWISSPFAM Domain found in 3C7Q: [TyrKc ] by SMART

Other resources with information on 3C7Q

Community annotation for 3C7Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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