3C9H Transport Protein date Feb 15, 2008
title Crystal Structure Of The Substrate Binding Protein Of The Ab Transporter From Agrobacterium Tumefaciens
authors R.Zhang, X.Xu, H.Zheng, A.Savchenko, A.M.Edwards, A.Joachimiak, Mi Center For Structural Genomics (Mcsg)
compound source
Molecule: Abc Transporter, Substrate Binding Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Agrobacterium Tumefaciens Str.
Organism_taxid: 176299
Strain: C58
Atcc: 33970
Gene: Gi:17936349, Agr_c_4480, Atu2467
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.313 86.947 109.642 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CIT, MG enzyme
Gene AGR (C. caroliniana)
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (3c9h.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3c9h.pdb2.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 3C9H
  • CSU: Contacts of Structural Units for 3C9H
  • Likely Quarternary Molecular Structure file(s) for 3C9H
  • Structure Factors (441 Kb)
  • Retrieve 3C9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C9H from S2C, [Save to disk]
  • Re-refined 3c9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C9H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C9H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d43c9h_, region H [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c9h] [3c9h_B] [3c9h_A]
  • SWISS-PROT database: [Q7CWZ6]
  • Domain organization of [Q7CWZ6_AGRT5] by SWISSPFAM
    • Other resources with information on 3C9H
  • Community annotation for 3C9H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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