3CAB Pheromone-Binding Protein date Feb 19, 2008
title Crystal Structure Of A Pheromone Binding Protein From Apis M Soaked At Ph 7.0
authors M.E.Pesenti, S.Spinelli, V.Bezirard, L.Briand, J.C.Pernollet, M.T C.Cambillau
compound source
Molecule: Pheromone-Binding Protein Asp1
Chain: A
Fragment: Unp Residues 26-144
Engineered: Yes
 Organism_scientific: Apis Mellifera
Organism_common: Honeybee
Expression_system: Pichia Pastoris
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phil-D2
symmetry Space Group: C 2 2 21
R_factor 0.175 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.478 86.185 49.557 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand GOL enzyme
related structures by homologous chain: 1GIG, 43CA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of the Honey Bee PBP Pheromone and pH-induced Conformational Change., Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Tegoni M, Cambillau C, J Mol Biol. 2008 Apr 27;. PMID:18508083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (3cab.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3CAB
  • CSU: Contacts of Structural Units for 3CAB
  • Likely Quarternary Molecular Structure file(s) for 3CAB
  • Structure Factors (593 Kb)
  • Retrieve 3CAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CAB from S2C, [Save to disk]
  • Re-refined 3cab structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CAB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CAB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d43cab_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cab_A] [3cab]
  • SWISS-PROT database: [Q8WRW5]
  • Domain organization of [Q8WRW5_APIME] by SWISSPFAM
  • Domain found in 3CAB: [PhBP ] by SMART
    • Other resources with information on 3CAB
  • Community annotation for 3CAB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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