3CAS Oxidoreductase date Feb 20, 2008
title Crystal Structure Of 5beta-Reductase (Akr1d1) In Complex Wit And 4-Androstenedione
authors F.Faucher, L.Cantin, R.Breton
compound source
Molecule: 3-Oxo-5-Beta-Steroid 4-Dehydrogenase
Chain: A, B
Synonym: Delta(4)-3-Ketosteroid 5-Beta-Reductase, Aldo-Keto Family 1 Member D1;
Ec: 1.3.1.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akr1d1, Srd5b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plys
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.410 110.870 130.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ASD, BME, EDO, NAP enzyme Oxidoreductase E.C.1.3.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of human Delta4-3-ketosteroid 5beta-reductase (AKR1D1) reveal the presence of an alternative binding site responsible for substrate inhibition., Faucher F, Cantin L, Luu-The V, Labrie F, Breton R, Biochemistry. 2008 Dec 23;47(51):13537-46. PMID:19075558
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (3cas.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (3cas.pdb2.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3CAS
  • CSU: Contacts of Structural Units for 3CAS
  • Likely Quarternary Molecular Structure file(s) for 3CAS
  • Structure Factors (375 Kb)
  • Retrieve 3CAS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CAS from S2C, [Save to disk]
  • Re-refined 3cas structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CAS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CAS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CAS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cas_B] [3cas] [3cas_A]
  • SWISS-PROT database: [P51857]
  • Domain organization of [AK1D1_HUMAN] by SWISSPFAM
  • Other resources with information on 3CAS
  • Community annotation for 3CAS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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