3CBQ Nucleotide Binding Protein date Feb 22, 2008
title Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
authors L.Nedyalkova, Y.Shen, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmi A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Gtp-Binding Protein Rem 2
Chain: A
Fragment: Residues 100-276
Synonym: Rad And Gem-Like Gtp-Binding Protein 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rem2, Gi:134105571
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: C 2 2 21
R_factor 0.190 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.143 64.330 73.204 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand EDO, GDP, MG, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3cbq.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 3CBQ
  • CSU: Contacts of Structural Units for 3CBQ
  • Likely Quarternary Molecular Structure file(s) for 3CBQ
  • Structure Factors (213 Kb)
  • Retrieve 3CBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CBQ from S2C, [Save to disk]
  • Re-refined 3cbq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CBQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CBQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cbq] [3cbq_A]
  • SWISS-PROT database: [Q8IYK8]
  • Domain organization of [REM2_HUMAN] by SWISSPFAM
  • Domain found in 3CBQ: [small_GTPase ] by SMART
  • Other resources with information on 3CBQ
  • Community annotation for 3CBQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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