3CBX Protein Binding date Feb 23, 2008
title The Dvl2 Pdz Domain In Complex With The C1 Inhibitory Peptid
authors B.A.Appleton, C.Wiesmann
compound source
Molecule: Dishevelled-2
Chain: A, B
Fragment: Pdz Domain (Unp Residues 264-354)
Synonym: Dsh Homolog 2, Segment Polarity Protein Dishevelle Dvl-2;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dvl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.214 61.112 65.818 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, MPD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInhibition of Wnt signaling by Dishevelled PDZ peptides., Zhang Y, Appleton BA, Wiesmann C, Lau T, Costa M, Hannoush RN, Sidhu SS, Nat Chem Biol. 2009 Apr;5(4):217-9. Epub 2009 Mar 1. PMID:19252499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3cbx.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3CBX
  • CSU: Contacts of Structural Units for 3CBX
  • Likely Quarternary Molecular Structure file(s) for 3CBX
  • Structure Factors (162 Kb)
  • Retrieve 3CBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CBX from S2C, [Save to disk]
  • Re-refined 3cbx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CBX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CBX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cbx_B] [3cbx_A] [3cbx]
  • SWISS-PROT database: [O14641]
  • Domain organization of [DVL2_HUMAN] by SWISSPFAM
  • Domain found in 3CBX: [PDZ ] by SMART
    • Other resources with information on 3CBX
  • Community annotation for 3CBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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