3CC0 Protein Binding date Feb 23, 2008
title The Dvl2 Pdz Domain In Complex With The N3 Inhibitory Peptid
authors B.A.Appleton, C.Wiesmann
compound source
Molecule: Dishevelled-2
Chain: A, B, C
Fragment: Pdz Domain (Unp Residues 264-354)
Synonym: Segment Polarity Protein Dishevelled Homolog Dvl-2 Homolog 2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dvl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65
R_factor 0.188 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.617 52.617 171.098 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceInhibition of Wnt signaling by Dishevelled PDZ peptides., Zhang Y, Appleton BA, Wiesmann C, Lau T, Costa M, Hannoush RN, Sidhu SS, Nat Chem Biol. 2009 Apr;5(4):217-9. Epub 2009 Mar 1. PMID:19252499
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3cc0.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3CC0
  • Likely Quarternary Molecular Structure file(s) for 3CC0
  • Structure Factors (191 Kb)
  • Retrieve 3CC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CC0 from S2C, [Save to disk]
  • Re-refined 3cc0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CC0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CC0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cc0_B] [3cc0_C] [3cc0] [3cc0_A]
  • SWISS-PROT database: [O14641]
  • Domain organization of [DVL2_HUMAN] by SWISSPFAM
  • Domain found in 3CC0: [PDZ ] by SMART
  • Other resources with information on 3CC0
  • Community annotation for 3CC0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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