3CC6 Transferase date Feb 25, 2008
title Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinas (Ptk2b)
authors R.D.Busam, L.Lehtio, T.Karlberg, C.H.Arrowsmith, C.Bountra, R.Col L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham T.Helleday, M.D.Herman, A.Johansson, I.Johansson, A.Kallas, T.Ko M.Moche, M.E.Nilsson, P.Nordlund, T.Nyman, C.Persson, J.Sagemark L.Svensson, A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weige M.Welin, H.Berglund, Structural Genomics Consortium (Sgc)
compound source
Molecule: Protein Tyrosine Kinase 2 Beta
Chain: A
Fragment: Kinase Domain: Residues 414-692
Synonym: Focal Adhesion Kinase 2, Fadk 2, Proline-Rich Tyro Kinase 2, Cell Adhesion Kinase Beta, Cak Beta, Calcium-Depe Tyrosine Kinase, Cadtk, Related Adhesion Focal Tyrosine Kin Raftk;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptk2b, Fak2, Pyk2, Raftk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Gold Yoph
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
37.450 96.140 43.200 90.00 93.66 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand GOL, MG enzyme Transferase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3cc6.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3CC6
  • CSU: Contacts of Structural Units for 3CC6
  • Likely Quarternary Molecular Structure file(s) for 3CC6
  • Structure Factors (573 Kb)
  • Retrieve 3CC6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CC6 from S2C, [Save to disk]
  • Re-refined 3cc6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CC6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CC6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CC6, from MSDmotif at EBI
  • Fold representative 3cc6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cc6_A] [3cc6]
  • SWISS-PROT database: [Q14289]
  • Domain organization of [FAK2_HUMAN] by SWISSPFAM
  • Domain found in 3CC6: [TyrKc ] by SMART
  • Other resources with information on 3CC6
  • Community annotation for 3CC6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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