3CCU Ribosome date Feb 26, 2008
title Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Mutation G2482c
authors G.Blaha, G.Gurel
compound source
Molecule: 50s Ribosomal Protein L2p
Chain: A
Synonym: Hmal2, Hl4
Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L3p
Chain: B
Synonym: Hmal3, Hl1

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L4p
Chain: C
Synonym: Hmal4, Hl6

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L5p
Chain: D
Synonym: Hmal5, Hl13

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L6p
Chain: E
Synonym: Hmal6, Hl10

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L7ae
Chain: F
Synonym: Hs6

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L10e
Chain: G
Synonym: Ribosomal Protein L10, Acidic Ribosomal Protein P0 L10e, Hmal10;

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L10e
Chain: H

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L11p
Chain: I
Synonym: Hmal11

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L13p
Chain: J
Synonym: Hmal13

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L14p
Chain: K
Synonym: Hmal14, Hl27

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L15p
Chain: L
Synonym: Hmal15, Hl9

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L15e
Chain: M
Synonym: 50s Ribosomal Protein Lc12

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L18p
Chain: N
Synonym: Hmal18, Hl12

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L18e
Chain: O
Synonym: Hl29, L19

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L19e
Chain: P
Synonym: Hmal19, Hl24

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L21e
Chain: Q
Synonym: Hl31

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L22p
Chain: R
Synonym: Hmal22, Hl23

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L23p
Chain: S
Synonym: Hmal23, Hl25, L21

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L24p
Chain: T
Synonym: Hmal24, Hl16, Hl15

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L24e
Chain: U
Synonym: Hl21hl22

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L29p
Chain: V
Synonym: Hmal29, Hl33

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L30p
Chain: W
Synonym: Hmal30, Hl20, Hl16

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L31e
Chain: X
Synonym: L34, Hl30

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L32e
Chain: Y
Synonym: Hl5

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L37ae
Chain: Z

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L37e
Chain: 1
Synonym: L35e

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L39e
Chain: 2
Synonym: Hl39e, Hl46e

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 50s Ribosomal Protein L44e
Chain: 3
Synonym: La, Hla

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 23s Ribosomal Rna
Chain
Mutation: Yes

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238

Molecule: 5s Ribosomal Rna
Chain: 9

Organism_scientific: Haloarcula Marismortui
Organism_common: Halobacterium Marismortui
Organism_taxid: 2238
symmetry Space Group: C 2 2 21
R_factor 0.179 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
211.756 299.274 574.365 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 1MA, CD, CL, K, MG, NA, OMG, OMU, PSU, SR, UR3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


A


B


C


D


E


F
  • ribonuclease P activity


  • G


    H


    I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceMutations outside the anisomycin-binding site can make ribosomes drug-resistant., Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA, J Mol Biol. 2008 Jun 6;379(3):505-19. Epub 2008 Apr 8. PMID:18455733
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1980 Kb) [Save to disk]
  • Biological Unit Coordinates (3ccu.pdb1.gz) 1942 Kb
  • LPC: Ligand-Protein Contacts for 3CCU
  • CSU: Contacts of Structural Units for 3CCU
  • Likely Quarternary Molecular Structure file(s) for 3CCU
  • Structure Factors (3860 Kb)
  • Retrieve 3CCU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CCU from S2C, [Save to disk]
  • Re-refined 3ccu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CCU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CCU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CCU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ccu_R] [3ccu_X] [3ccu_H] [3ccu_F] [3ccu_Q] [3ccu_K] [3ccu_C] [3ccu_G] [3ccu_I] [3ccu_W] [3ccu_Y] [3ccu_2] [3ccu_M] [3ccu_B] [3ccu_P] [3ccu_D] [3ccu_V] [3ccu_L] [3ccu_E] [3ccu_0] [3ccu_T] [3ccu_U] [3ccu_3] [3ccu_Z] [3ccu_9] [3ccu_1] [3ccu] [3ccu_J] [3ccu_A] [3ccu_N] [3ccu_S] [3ccu_O]
  • SWISS-PROT database: [P60617] [P14122] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domain organization of [RL10_HALMA] [RL11_HALMA] [RL13_HALMA] [RL14_HALMA] [RL15E_HALMA] [RL15_HALMA] [RL18E_HALMA] [RL18_HALMA] [RL19_HALMA] [RL21_HALMA] [RL22_HALMA] [RL23_HALMA] [RL24E_HALMA] [RL24_HALMA] [RL29_HALMA] [RL2_HALMA] [RL30_HALMA] [RL31_HALMA] [RL32_HALMA] [RL37A_HALMA] [RL37_HALMA] [RL39_HALMA] [RL3_HALMA] [RL44_HALMA] [RL4_HALMA] [RL5_HALMA] [RL6_HALMA] [RL7A_HALMA] [RLA0_HALMA] by SWISSPFAM
  • Domains found in 3CCU: [HhH1] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART
  • Other resources with information on 3CCU
  • Community annotation for 3CCU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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