3CD4 T-Cell Surface Glycoprotein date Jul 30, 1992
title Refinement And Analysis Of The First Two Domains Of Human Cd4
authors T.P.J.Garrett, J.Wang, Y.Yan, S.C.Harrison
compound source
Molecule: T Cell Surface Glycoprotein Cd4
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Ovary
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.230 30.650 88.940 90.00 118.43 90.00
method X-Ray Diffractionresolution 2.20 Å
note 3CD4 supersedes 2CD4
related structures by homologous chain: 1CDY, 1RZJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefinement and analysis of the structure of the first two domains of human CD4., Garrett TP, Wang J, Yan Y, Liu J, Harrison SC, J Mol Biol 1993 Dec 5;234(3):763-78. PMID:8254672
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3cd4.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 3CD4
  • Likely Quarternary Molecular Structure file(s) for 3CD4
  • Retrieve 3CD4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CD4 from S2C, [Save to disk]
    • View 3CD4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CD4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CD4, from MSDmotif at EBI
  • Genome occurence of 3CD4's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3cd4_1, region 1-97 [Jmol] [rasmolscript] [script source]
        - Domain d3cd4_2, region 98-178 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cd4] [3cd4_A]
  • SWISS-PROT database: [P01730]
  • Domain organization of [CD4_HUMAN] by SWISSPFAM
  • Domains found in 3CD4: [IG_like] [IGv ] by SMART
    • Other resources with information on 3CD4
  • Community annotation for 3CD4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 3CD4 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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