3CD5	Oxidoreductase	date	Feb 26, 2008
title	Thermodynamic And Structure Guided Design Of Statin Hmg-Coa Inhibitors
authors	A.Pavlovsky, R.W.Sarver, M.S.Harris, B.C.Finzel
compound		source
Molecule: 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Chain: A, B, C, D Fragment: Catalytic Domain (Residues 441-875) Synonym: Hmg-Coa Reductase Ec: 1.1.1.34 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Hmgcr Expression_system: Escherichia Coli Expression_system_strain: Bl21 Star
symmetry	Space Group: P 1 21 1	R_factor 0.198 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.041 173.178 75.962 90.00 118.76 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	7HI, SO4	enzyme	Oxidoreductase E.C.1.1.1.34 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Thermodynamic and Structure Guided Design of Statin Based Inhibitors of 3-Hydroxy-3-Methylglutaryl Coenzyme A Reductase., Sarver RW, Bills E, Bolton G, Bratton LD, Caspers NL, Dunbar JB, Harris MS, Hutchings RH, Kennedy RM, Larsen SD, Pavlovsky A, Pfefferkorn JA, Bainbridge G, J Med Chem. 2008 Jun 10;. PMID:18540668

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk] Biological Unit Coordinates (3cd5.pdb1.gz) 256 Kb LPC: Ligand-Protein Contacts for 3CD5 CSU: Contacts of Structural Units for 3CD5 Likely Quarternary Molecular Structure file(s) for 3CD5 Structure Factors (1206 Kb) Retrieve 3CD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CD5 from S2C, [Save to disk] Re-refined 3cd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CD5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CD5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CD5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cd5_A] [3cd5_C] [3cd5_D] [3cd5_B] [3cd5] SWISS-PROT database: [P04035] Belongs to the resistance-nodulation-cell division (rnd) superfamily according to TCDB. Domain organization of [HMDH_HUMAN] by SWISSPFAM

Other resources with information on 3CD5

Community annotation for 3CD5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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