3CDD	Structural Protein	date	Feb 26, 2008
title	Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein Fro Shewanella Oneidensis
authors	C.Chang, E.Evdokimova, M.Kudritska, A.Savchenko, A.M.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound		source
Molecule: Prophage Muso2, 43 Kda Tail Protein Chain: A, B, C, D, E, F Engineered: Yes		Organism_scientific: Shewanella Oneidensis Organism_taxid: 211586 Strain: Mr-1 Gene: So_2699 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.345 82.445 151.832 90.00 100.20 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	MSE	enzyme
Gene	SO
Gene Ontology	Chain Function Process Component F, A, D, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk] Biological Unit Coordinates (3cdd.pdb1.gz) 167 Kb Biological Unit Coordinates (3cdd.pdb2.gz) 166 Kb LPC: Ligand-Protein Contacts for 3CDD CSU: Contacts of Structural Units for 3CDD Likely Quarternary Molecular Structure file(s) for 3CDD Structure Factors (2753 Kb) Retrieve 3CDD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CDD from S2C, [Save to disk] Re-refined 3cdd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CDD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CDD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CDD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cdd_D] [3cdd_C] [3cdd] [3cdd_F] [3cdd_A] [3cdd_B] [3cdd_E] SWISS-PROT database: [Q8EDP4] Domain organization of [Q8EDP4_SHEON] by SWISSPFAM

Other resources with information on 3CDD

Community annotation for 3CDD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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