3CED Hydrolase date Feb 28, 2008
title Crystal Structure Of The C-Terminal Nil Domain Of An Abc Tra Protein Homologue From Staphylococcus Aureus
authors M.E.Cuff, L.Bigelow, S.Clancy, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Methionine Import Atp-Binding Protein Metn 2
Chain: A, B, C
Fragment: Nil Domain: Residues 247-341
Ec: 3.6.3.-
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 158878
Strain: Mu50
Atcc: 700699
Gene: Metn2, Sav0837
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: I 4 2 2
R_factor 0.184 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.550 132.550 132.083 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand BU1, MSE enzyme Hydrolase E.C.3.6.3 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3ced.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (3ced.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (3ced.pdb3.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 3CED
  • CSU: Contacts of Structural Units for 3CED
  • Likely Quarternary Molecular Structure file(s) for 3CED
  • Structure Factors (1094 Kb)
  • Retrieve 3CED in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CED from S2C, [Save to disk]
  • Re-refined 3ced structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CED in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CED
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CED, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ced_B] [3ced_C] [3ced] [3ced_A]
  • SWISS-PROT database: [Q99VG8]
  • Domain organization of [METN2_STAAM] by SWISSPFAM
  • Domain found in 3CED: [NIL ] by SMART
    • Other resources with information on 3CED
  • Community annotation for 3CED at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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