3CFP	Transferase Dna	date	Mar 04, 2008
title	Structure Of The Replicating Complex Of A Pol Alpha Family D Polymerase, Ternary Complex 1
authors	J.Wang, D.Klimenko, M.Wang, T.A.Steitz, W.H.Konigsberg
compound		source
Molecule: Dna (5'- D(Dapdcpdapdgpdgpdtpdapdapdgpdcpdapdgpdtpdcp Pdg)-3'); Chain: T Engineered: Yes Other_details: Substrate Dna, Template Strand		Synthetic: Yes Other_details: Synthesized By W.M. Keck Facility At Yale University);
Molecule: Dna (5'- D(Dgpdcpdgpdgpdapdcpdtpdgpdcpdtpdtpdapdcp(Doc Chain: P Engineered: Yes Other_details: Substrate Dna, Primer Strand		Synthetic: Yes Other_details: Synthesized By W.M. Keck Facility At Yale University);
Molecule: Dna Polymerase Chain: A Synonym: Gp43 Ec: 2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Bacteriophage Rb69 Gene: 43 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.197 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.726 117.281 126.813 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CA, CL, DOC, TTP	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A DNA-directed DNA polymerase ... nuclease activity exonuclease activity 3'-5' exonuclease activity

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk] Biological Unit Coordinates (3cfp.pdb1.gz) 165 Kb LPC: Ligand-Protein Contacts for 3CFP CSU: Contacts of Structural Units for 3CFP Likely Quarternary Molecular Structure file(s) for 3CFP Structure Factors (327 Kb) Retrieve 3CFP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CFP from S2C, [Save to disk] Re-refined 3cfp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CFP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CFP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CFP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cfp_P] [3cfp_T] [3cfp_A] [3cfp] SWISS-PROT database: [Q38087] Domain organization of [DPOL_BPR69] by SWISSPFAM Domain found in 3CFP: [POLBc ] by SMART

Other resources with information on 3CFP

Community annotation for 3CFP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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