3CFS Histone Chaperone date Mar 04, 2008
title Structural Basis Of The Interaction Of Rbap46rbap48 With Hi
authors N.V.Murzina, X.Y.Pei, J.V.Pratap, M.Sparkes, J.Vicente-Garcia, T Shahar, A.Verreault, B.F.Luisi, E.D.Laue
compound source
Molecule: Histone-Binding Protein Rbbp7
Chain: B
Synonym: Retinoblastoma-Binding Protein 7, Rbbp-7, Retinobl Binding Protein P46, Histone Acetyltransferase Type B Subun Nucleosome-Remodeling Factor Subunit Rbap46;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Rbbp7
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pvl1393

Molecule: Histone H4
Chain: E
Fragment: Unp Residues 28 To 42
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Hist1h4a
Expression_system: Escherichia Coli
Expression_system_cell_line: Tuner(De3)Laci
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex2tl
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.249
length a length b length c angle alpha angle beta angle gamma
44.665 85.725 117.723 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ARS enzyme


Primary referenceStructural Basis for the Recognition of Histone H4 by the Histone-Chaperone RbAp46., Murzina NV, Pei XY, Zhang W, Sparkes M, Vicente-Garcia J, Pratap JV, McLaughlin SH, Ben-Shahar TR, Verreault A, Luisi BF, Laue ED, Structure. 2008 Jul;16(7):1077-85. Epub 2008 Jun 19. PMID:18571423
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3cfs.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3CFS
  • CSU: Contacts of Structural Units for 3CFS
  • Likely Quarternary Molecular Structure file(s) for 3CFS
  • Structure Factors (720 Kb)
  • Retrieve 3CFS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CFS from S2C, [Save to disk]
  • Re-refined 3cfs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CFS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CFS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CFS, from MSDmotif at EBI
  • Fold representative 3cfs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cfs_B] [3cfs_E] [3cfs]
  • SWISS-PROT database: [P62805] [Q16576]
  • Domain organization of [H4_HUMAN] [RBBP7_HUMAN] by SWISSPFAM
  • Domain found in 3CFS: [WD40 ] by SMART
  • Other resources with information on 3CFS
  • Community annotation for 3CFS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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